![]() ![]() coli isolate data set and 20 minutes for the E. Assembly takes about 10 minutes for the E. BayesHammer runs in approximately half an hour and takes up to 8Gb of RAM to perform read error correction on each data set. We ran SPAdes with default parameters using 16 threads on a server with Intel Xeon 2.27GHz processors. coli 6.3 Gb, 29M reads, 2x100bp, insert size ~ 270bp (originally downloaded from here) ![]() coli 6.2Gb, 28M reads, 2x100bp, insert size ~ 215bp In this section we give approximate data about SPAdes performance on two data sets: It is also possible to use only the read error correction stage, if you wish to use another assembler. However, if you use your own read correction tool, it is possible to turn error correction module off. We recommend to run SPAdes with BayesHammer/IonHammer to obtain high-quality assemblies.
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